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Marker
Gene Monthly Newsletter
November, 2005
Volume
5, Number 11
© Copyright MGT, Inc., 2007. Published by
Marker Gene Technologies, Inc., The University of Oregon Riverfront Research
Park, 1850 Millrace Drive, Eugene, Oregon 97403-1992 USA. All rights reserved. For information on the use or copying of the
material contained in this document, please contact us at techservice@markergene.com. Please see below for subscription
information and updates. This
newsletter is labeled as an ADVERTISEMENT in accordance with the
CAN-SPAM act of 2003, S.877 Public Law: 108-187.
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Circadian Rhythms Monitored Using an mPer2 Luciferase Construct.
Circadian
Rhythms (often termed the biological clock) control a variety of biological functions
in organisms by genetic control of gene expression and physiology. Recent work from the laboratory of David K.
Welsh and Steven Kay at the Department of Cell Biology, Scripps Research
Institute, have been able to monitor the circadian rhythms in individual SCN
mammalian cells using a mPer2 promoter linked to the firefly luciferase gene,
with addition of the substrate D-Luciferin (M0237). This assay monitored chemiluminescent light
emission as a function of time. Using a
“knock-in” mutant approach, homologous recombination was used to insert into
the circadian clock gene mPer2, a luciferase gene under control of the mPer2
promoter. The circadian phenotype of the new “knock-in” cells was normal,
without detectable effect on the tertiary structure of the mPer2 protein. As expression of the mPer2 protein increased
(on a 24-hour cycle) so did the output of light. A landmark paper was also recently published by Yamaguchi, et al.
using a similar mPer1-luciferase construct for single-cell bioluminescence
imaging. These assays have revealed new
features of the cellular organization of the central mammalian circadian
clock. Because the light intensity for
these assays are so low, the cell images required 30 minute exposures using a
high-sensitivity CCD camera to monitor the changes.
The SCN
cells come from the suprachiasmatic nucleus, a tiny cluster of neurons located
in the hypothalamus that is thought to be the “clock pacemaker” of the
brain. SCN cells in culture have been
found to maintain their circadian rhythms. The same clock genes have been found to be expressed rhythmically in
fibroblasts and other cell types, but it is not known if this rhythm is driven
by an internal clock or merely synchronized externally. Fibroblasts in culture maintain circadian
rhythms that persist for about a day, but then begin to decrease in amplitude. For more information about luciferase assays
and circadian rhythm analyses, please see the references below, or visit our
website.
- Welsh D..K., Imaizumi T., Kay
S.A., (2005) “Real-time reporting of circadian-regulated gene expression
by luciferase imaging in plants and Mammalian cells.” Methods Enzymol 393: 269-88.
- Welsh
D.K., Yoo S.H., Liu A.C., Takahashi J.S., Kay S.A., (2004)
“Bioluminescence imaging of individual fibroblasts reveals persistent,
independently phased circadian rhythms of clock gene expression.” Curr Biol 14(24): 2289-95.
- ·Welsh D.K., Kay S.A.,
(2005) “Bioluminescence
imaging in living organisms.” Curr.
Opin. Biotechnol. 16(1): 73-8.
- Welsh D.K., Logothetis
DE., Meister M., Reppert S.M., (1995) “Individual neurons dissociated from rat
suprachiasmatic nucleus express independently phased circadian firing rhythms.” Neuron 14(4): 697-706.
- Yamaguchi
S., Isejima H., Matsuo T., Okura R., Yagita K., Kobayashi M., Okamura H.,
(2003) “Synchronization of cellular clocks in the suprachiasmatic nucleus.”
Science, 302:1408-1412.
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Viability Assays for
Eukaryotic Cells.
Cell viability assays are commonly used to assess the
effects of secondary reagent application or the physiological state of
eukaryotic cells. These assays include those based on the generation of the
colorimetric end product, formazan. The MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide) assay is based on the ability of metabolically active cells to
cleave the tetrazolium rings of MTT, forming dark blue formazan crystals
within the cell. The cells are then lysed and the formazan crystals are
solubilized with detergent. The resulting color can be quantified using a
standard spectrophotometer, reading absorbance at 570 nm. The number of live
cells is directly proportional to the intensity of the dye. XTT (2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide)
is an alternative tetrazolium salt. Unlike MTT, the XTT formazan dye is water
soluble and does not require a solubilization step. Absorbance is measured at
490 nm. Fluorimetric assays based on compounds such as calcein AM and carboxyfluorescein diacetate (CFDA) (M0011) can
also be used to determine cell viability. These molecules passively diffuse
into cells, but only live cells with functional esterase activity will
hydrolyze the molecules, producing the fluorescent dyes calcein and
carboxyfluorescein. Both dyes will stain the cytoplasm of the cells. Calcein
has peak absorbance and emission wavelengths at 494 nm and 517 nm,
respectively. Carboxyfluorescein has peaks at 475 nm and 517 nm. Marker Gene also sells a convenient Live:Dead
Assay Kit (M0795)
that contains both carboxyfluorescein for labeling live cells and propidium
iodide, which labels dead cells red. For more information about these assays and techniques, please visit
our website or see the references below:
- T. Mosmann (1983) “Rapid colorimetric Assay for
Cellular Growth and Survival: Application to Proliferation and
Cytotoxicity Assays” J. Immunol. Meth. 65(1-2): 55-63.
- D.A. Scudiero, R.H. Shoemaker, K.D. Paull, A.
Monks, S. Tierney, T.H. Nofiziger, M.J. Currens, D. Seniff, M.R. Boyd
(1988) “Evaluation of a Soluble Tetrazolium/Formazan Assay for Cell
Growth and Drug Sensitivity in Culture Using human and other Cell Lines”
Cancer Res. 48: 4827-4833.
- N.R. Washburn, C.G. Simon Jr, A. Tona, H.M.
Elgendy, A. Karim, E.J. Amis (2002)“Co-extrusion of Biocompatible
Polymers for Scaffolds with Co-continuous Morphology” J. Biomed. Mater
Res. 60: 20-29.
- C.R. Parish (1999) “Lymphocyte Migration and
Proliferation Studies” Immunol. Cell Biol. 77:499-508.
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Lipase Activity
Measurement in Live Cells.
Triacylglycerides are metabolized inside living cells by lipases [EC
3.1.1.3]. In normal serum the
concentration of lipase is low. In acute pancreatitis and in pancreatic
carcinoma a rise in serum (pancreatic) lipase activity occurs, with a mean
increase being about 50 times that of normal values. A rise in the serum
lipase (hepatic lipase) content is also found in acute and chronic renal
diseases. Sensitive measurement of
lipase activity in live cells can be accomplished using the fluorescent
substrate 1,2-Dioleoyl-3-(pyren-1-yl)decanoyl-rac Glycerol (M0258). Upon enzymatic cleavage, the fluorescent
fatty acid, pyrenedecanoic
acid (M0274)
is released, which accumulates in cellular membranes. The substrate displays eximer formation,
and upon enzymatic activity, there is a fluorescence shift to shorter
wavelengths. This can be distinguished from that of the
substrate, because of the reduction of the eximer form inside the membrane
(EM: 470nm @ EX: 390nm). This assay
is quantitative and can be used with mammalian or bacterial cell lines. It can also be used in a purified enzyme
format with the addition of lipid vesicles or added membrane components. This assay has also found use in
measurement of endothelial lipases (EL) and lipoprotein lipase (LPL). For more information about this assay see
the references below: NOTE: Marker
Gene also sells a convenient Fluorescent Lipase
Assay Kit (M0612) with
all of the reagents and a detailed protocol for measuring lipase activity in
living cells.
- Dousset, N., Negre, A., Salvayre, R., Rogalle,
P., Dang, Q.Q., Douste-Blazy, L. (1988). “Use of a fluorescent
radiolabeled triacylglycerol as a substrate for lipoprotein lipase and
hepatic triglyceride lipase.” Lipids 23: 605-608.
- Main, L.A., Okumura-Noji, K., Ohnishi, T.,
Yokoyama, S., (1998) “Cholesteryl ester transfer protein reaction
between plasma er R.,
(2000) “Methods for lipase detection and assay: a critical review” Eur.
J. Lipid Sci. Technol.2000: 133–153.
- lipoproteins.” J. Biochem. (Tokyo) 124: 237-243.
- Negre-Salvayre, A., Abouakil, N., Lombardo, D.,
Salvayre, R., (1990) "Hydrolysis of fluorescent pyrene-acyl esters
by human pancreatic carboxylic ester hydrolase and bile salt-stimulated
lipase." Lipids 25(8):
428-434.
- Beisson F., Tiss, A., Rivière C., Verg
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Stock up and Save!
Marker Gene will introduce a price increase of 5% on most products and
kits from our catalog, starting on January 1st, 2006. Orders placed and received before January 1st will still be
credited for our 2005 prices. So
place your orders now, online, through one of our distribution partners, by
FAX (1-541-342-1960) or by telephone (toll-free) at 1-888-218-4062, and
save. For more information on the
new pricing for individual products, or for a quote on bulk quantities of our
products or kits, please contact our technical assistance staff at techservice@markergene.com. We will be happy to assist you.
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New lacZco Vector Systems.
Marker Gene offers a variety of new
vectors with improved expression profiles for the lacZ (b-galactosidase)
gene (M1015,
pCMVblacZco; M1016,
pSV40blacZco, M1017 pCMVblac Znls12co and M1018 pSV40blac Znls12co). These vectors contain a coding sequence
for the E. coli lacZ gene that has been
codon-optimised when expressed in mammalian cells. This results in the expression of b-galactosidase at levels up to 15-fold higher than those
resulting from an analogous construct containing the native E. coli gene sequence. RNA analysis
suggests the enhancement of b-galactosidase
expression is due both to enhanced transcript stability and increased
translational efficiency. The nls12
sequence variant also targets the
protein for nuclear localization by the addition of a twelve amino acid
sequence, ProLysLysLysArgLysValGluAspProLysAsp (from the SV40 T antigen
nuclear localization signal) after the methionine initiation residue.
Marker Gene is currently working
with Dr. Donald Anson at the Department
of Chemical Pathology, Women's and Children's Hospital in North Adelaide,
Australia to also provide newly developed lacZ expression lentiviral
vectors with high expression efficiency in mammalian cells. When used in such a lentiviral construct,
the codon-optimised gene gives an approximately five-fold increase in
apparent titre, as determined by X-Gal staining, in comparison to an
analogous construct containing the native E. coli gene. In addition, codon-optimisation results in
the elimination of several cryptic splice acceptor sites that are present in
the native E. coli gene sequence. In a lentiviral vector containing a 5'
splice donor the use of the codon-optimised gene in place of the native E. coli beta-galactosidase gene
resulted in increased amounts of un-spliced, full-length genomic RNA.
Therefore, as a marker/reporter gene in mammalian cells the codon-optimised b-galactosidase gene has a number of
advantages over the native E. coli gene sequence. For more information on these new vector systems, see the
references below or visit our website. Look for these new vectors in kits from Marker Gene soon!
- Anson D.S., Limberis M., (2004) “An improved
beta-galactosidase reporter gene.” J Biotechnol 108(1): 17-30.
- http://biology.kenyon.edu/courses/biol09/betagal/FRAMES/
- MacGregor,
G. R. & Caskey, C. T. (1989) “Construction of plasmids that express E.
coli beta-galactosidase in mammalian cells.” Nucleic Acids Res. 17:2365.
- Okayama, H. & Berg, P. (1983) “A cDNA
cloning vector that permits expression of cDNA inserts in mammalian
cells.” Mol. Cell Biol. 3:280-289.
- MacGregor, G. R.,et al. (1987)
“Histochemical staining of clonal mammalian cell lines expressing E.
coli beta-galactosidase indicates heterogeneous expression of the
bacterial gene.” Somat. Cell Mol. Genet. 13:253-265.
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Compare Our Quality.
Marker Gene strives to offer our customers products of the highest quality and at the best possible prices. Our years of experience allow us to provide timely products for less cost to you. See our latest Price Comparison Chart that compares our prices with those from several alternate sources, to see if you can save money by switching to Marker Gene (http://www.markergene.com/crossref.htm). Or visit our website at www.markergene.com and click on the link “COMPARE”. We think you will appreciate our efforts to keep costs low and maintain excellent quality of our products for your research. For more information about any of our products, simply telephone us toll free at 1-888-218-4062 or contact us by e-mail at techservice@markergene.com. We will be happy to send you more about our products and their specifications. |
CONTRACT RESEARCH@markergene.com
Marker Gene Technologies, Inc. has the expertise to perform contract research with you on your project. We have worked with many biotechnology and pharmaceutical companies on successful, proprietary and patented projects.
Contract Research and Development Capabilities in the following areas:
- Established in 1993 at the University of Oregon Riverfront Research Park.
- Screening Assay Development for HTS and uHTS
- Chemical and Cellular Assays – High-Content Screening.
- DNA/RNA (genomics) and protein (proteomics) labeling and assay development.
- Pharmaceutical Intermediates - design, synthesis, and in vitro testing in mammalian cell culture.
- Specializing in Carbohydrate, Lipid, Peptide, and Nucleic Acid Chemistries.
- Fully equipped laboratories (Biochemistry, Chemical Synthesis, Tissue Culture, Analytical).
- Confidentiality, help in patent preparation and filings.
Contact us by telephone at (888) 218-4062 or (541) 342-3760 or FAX us at (541) 342-1960 or you can write to us at Contract Research, Marker Gene Technologies, Inc., 1850 Millrace Drive, Eugene, Oregon 97403-1992 or contact us by e-mail at: techservice@markergene.com
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Marker Gene Accepts Major Credit Cards.
Place your orders now, using Master Card or Visa and save time and money! Our Customer Assistance Staff can now accept either Master Card or Visa Credit Card orders, securely by telephone (toll-free) at 1-888-218-4062 (Domestic orders only). We will continue to accept Institutional Purchase Orders for our products, online or by FAX at 1-541-342-1960. International customers should contact us by e-mail, post or telephone for more information about International Distributors and ordering. For information on pricing for individual products, or for a quote on bulk quantities of our products or kits, please contact our technical assistance staff at techservice@markergene.com. We will be happy to assist you.
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