|
 |
|
Marker
Gene Monthly Newsletter
February, 2005
Volume
5, Number 2
© Copyright MGT, Inc., 2007. Published by
Marker Gene Technologies, Inc., The University of Oregon Riverfront Research
Park, 1850 Millrace Drive, Eugene, Oregon 97403-1992 USA. All rights reserved. For information on the use or copying of the
material contained in this document, please contact us at techservice@markergene.com. Please see below for subscription
information and updates. This
newsletter is labeled as an ADVERTISEMENT in accordance with the
CAN-SPAM act of 2003, S.877 Public Law: 108-187.
|
Leaky RNAi Targeting.
Recent reports of non-specific RNAi interactions may complicate the
interpretation of experimental data, particularly when used in high-throughput
assays, microarray analyses or for diagnostic or therapeutic applications. RNA silencing using small interfering RNA’s
(RNAi) is a sequence specific RNA degradation process that is triggered by the
formation of double stranded RNA in the cell. Complementary sequences of single stranded RNA (21 bp) are introduced by
viral methods or as transgenes in vector constructs. When duplexes form, cellular degradation
processes mediate the degradation of the target mRNA, and result in loss of
target gene expression. The method
seems to take advantage of a natural defense mechanism in cells that is used
to prevent viral infection. But
specificity of binding is paramount for targeting. In recent reports, RNAi targeted toward luciferase, a firefly
protein with no close relatives in the human genome, was introduced into a
human HeLa cell line, but exhibited effects on over 1800 genes. Similarly, two different RNAi’s targeted
toward GFP caused differential effects on expression of both GFP and endogenous
proteins. There have also been
experiments in which RNAi’s have been constructed with slight
mismatches for their intended target, but have still worked better than
expected. In addition, RNAi’s have been
found to initiate an interferon response, suggesting that the technique may
cause cells to respond as if they're
- Bridge,
A.J. et al. (2003) Induction of an interferon response by RNAi vectors in
mammalian cells. Nat. Genet. 34:
263–264.
- Scacheri,P.C.et
al. (2004) Short interfering RNAs can induce unexpected and divergent changes
in the levels of untargeted proteins in mammalian cells. Proc. Natl. Acad. Sci.
U. S. A. 101: 1892–1897.
- Persengiev,
S.P. et al. (2004) Nonspecific, concentration-dependent stimulation and
repression of mammalian gene expression by small interfering RNAs (siRNAs). RNA 10: 12–18.
- A.
L. Jackson and P. S. Linsley (2004) “Noise amidst the silence: off-target effects of
siRNAs?” TRENDS
in Genetics 20(11): 521-524.
|
Gaucher’s Disease – a Lysosomal
Storage Disorder.
People with Gaucher’s disease lack the normal form of the
enzyme glucocerebrosidase and are unable to break down glucocerebroside
glycolipids. Instead, the
glucocerebrosides remain stored within macrophage lysosomes, preventing the
macrophages from functioning normally. Enlarged macrophages containing undigested glucocerebroside are called
Gaucher cells. These cells are the
hallmark of the disease. Gaucher
disease is the most common of so-called "storage" disorders, with
an occurrence of about 2 newborns of every 100,000 live births. The most widely known of these disorders
is Tay-Sachs disease. The
fluorogenic substrate fluorescein
di-b-D-glucopyranoside (FDGlc, M0881) is one of
the most sensitive substrates for detecting glucocerebrosidase
and general -glucosidase
activity in both cells and cell extracts.
This
substrate has also been used to demonstrate the utility of Saccharomyces
cerevisiae and Candida albicans exo-1,3- -glucanase
genes as reporter genes. Because
these reporter genes encode secreted proteins, assays for reporter gene
expression do not require cell permeabilization. Marker Gene also provides the red fluorogenic resorufin b-D-glucopyranoside (M0569)
substrate, which is a more stable, long-wavelength analog for detection of
these important enzymes. Please see
our website or the references below for more information.
- Kohen E., Kohen C., Hirschberg J.G., Santus R., Grabowski G.,
Mangel W., Gatt S., Prince J., (1993) "An in situ study of
beta-glucosidase activity in normal and Gaucher fibroblasts with
fluorogenic probes." Cell Biochem. Funct. 11: 167-177.
- Cid V.J., Alvarez A.M., Santos A.I., Nombela C., Sanchez M.,
(1994) "Yeast exo-beta-glucanases can be used as efficient and
readily detectable reporter genes in Saccharomyces cerevisiae."
Yeast 10: 747-756.
- van Es H.H., Veldwijk M., Havenga M., Valerio D. (1997) "A
flow cytometric assay for lysosomal glucocerebrosidase" Anal.
Biochem.247:268-271.
- Chan KW; Waire J; Simons B., (2004) "Measurement of
lysosomal glucocerebrosidase activity in mouse liver using a
fluorescence-activated cell sorter assay." Anal Biochem
334(2): 227-33.
- Rudensky B., Paz E., Altarescu G., (2003)
"Fluorescent flow cytometric assay: a new diagnostic tool for
measuring beta-glucocerebrosidase activity in Gaucher
disease." Blood Cells Mol. Dis. 30(1): 97-9.
|
Barnase expression
utilizes negative selection.
The barnase gene codes for a highly
active RNase from Bacillus amyloliquefaciens. It has been utilized in plant molecular
biology for decades as a method of selection for recombinant plant
species. The bacteria Bacillus
amyloliquefaciens manufactures this cytotoxic 110-residue extracellular
ribonuclease, which cleaves single-stranded RNA through hydrolysis of
phosphodiester bonds. The complete
system typically utilizes two components, the enzyme barnase, which kills cells
expressing it, and a ‘site-specific’ recombinase, which is used to block the
action of barnase until it is required. A third component, the barstar gene,
codes for the barstar protein, a 90-residue polypeptide that’s a steric
inhibitor of barnase, useful in neutralizing its activity. Co-expression of barnase and barstar allow
continued growth and development. In
addition to its use in plant molecular biology, the barnase gene has recently
been incorporated into mammalian expression vectors for use in selection of
recombinant cells, either under control of a tetracycline inducible promoter
system, or by including a multiple cloning site within the barnase gene
sequence. In the latter case,
subcloning a gene of interest within the barnase sequence, destroys its
activity, and allows recombinant cells to grow, while untransfected cells are
ablated. For more information about these new techniques, see the references
below.
-
Hartley,R.W. (1989)
“Barnase and Barstar: Two small small proteins to fold and fit together.” Trends Biochem. Sci., 14:
450–454.
- S. Leuchtenberger, A. Perz, C. Gatz , J. W. Bartsch (2001) “Conditional cell ablation by stringent
tetracycline-dependent regulation of barnase in mammalian cells.”
Nucleic Acids Research 29(16): 76-80.
- Yazynin S., Lange H.,
Mokros T., Deyev S., Lemke H., (1999) “A new phagemid vector for
positive selection of recombinants based on a conditionally lethal barnase
gene.” FEBS Lett. 452(3): 351-4.
- Yazynin S.A., Deyev
S.M., Jucovic M., Hartley R.W., (1996) “A plasmid vector with positive
selection and directional cloning based on a conditionally lethal gene.” Gene 169(1): 131-2.
|
Fluorescent Glutathione
Transferase Assay.
Glutathione (GSH), is a tripeptide (g-glutamyl-cysteinyl-glycine) that represents
the major free thiol in most living cells. It is involved in many biological processes including detoxification
of xenobiotics, removal of hydroperoxides, and maintenance of the oxidation
state of protein sulfhydryls. It is
the key antioxidant present in animal tissues, and diminished glutathione levels have been observed in the early stages of
apoptosis. Older methods for
determining glutathione utilize 5,5’-dithiobis(2-nitrobenzoic
acid) (DTNB or Ellman’s reagent) in an oxidation or oxidation-reduction
scheme. But these methods have been largely replaced by a widely used method for determining GSH in
living cells. By simply adding monochlorobimane (M1045) to
cell culture medium and allowing intracellular
glutathione S-transferases to form GSH-mCB complexes, levels of
GSH can be measured fluorometrically. Unlike other bimanes such as monobromobimane, monochlorobimane appears to form an adduct exclusively with GSH. The membrane-permeant monochlorobimane has been used to measure GSH in live cells and in flow cytometry
systems. This procedure has been used
to measure GSH content of cultured neural cells and in
tissue homogenates and, indeed, several laboratories have used this approach to measure the GSH content of the cytosolic fraction liver and intact tissues. It has been found
that monochlorobimane readily enters cells to form a fluorescent
GSH–mono-chlorobimane adduct that can be measured fluorometrically and that this reaction is
catalyzed by glutathione S-transferase. Please see our
website for more information about these techniques, and look for new
products from Marker Gene in this area. Additional information is available in the references below.
- Fernandez-Checa,
J. C., Kaplowitz, N. (1990) “The use of monochlorobimane to determine
hepatic GSH levels and synthesis.” Anal.
Biochem. 190: 212–219.
- H.
Kamencic, A. Lyon, P. G. Paterson, B. H. J. Juurlink (2000) “Monochlorobimane
Fluorometric Method to Measure Tissue Glutathione” Analytical
Biochemistry 286: 35–37.
- Reichelt,
W., Stabel-Burow, J., Pannicke, T., Weichert, H., Heinemann, U. (1997) “The glutathione level of retinal
Müller glial cells is dependent on the high-affinity sodium-dependent
uptake of glutamate.” Neuroscience 77: 1213–1224.
- Devesa,
A., Oconnor, J. E., Garcia, C., Puertes, I. R., Vina, J. R. (1993) “Glutathione metabolism in primary
astrocyte cultures: flow cytometric evidence of heterogeneous distribution
of GSH content.” Brain
Res. 618: 181–189.
- Kannan,
R., Tang, D., Mackic, J. B., Zlokovic, B. V., Fernandez-Checa, J. C.
(1993) “A simple technique to
determine glutathione (GSH) levels and synthesis in ocular tissues as
GSH-bimane adduct: application to normal and galactosemic guinea-pigs.” Exp. Eye Res. 56: 45–50.
|
The DAAO Selection Marker
Technology described in our July, 2004
WebNewsletter (SELDATM Technology) is available for license
from BASF Plant Sciences GmbH. Please
contact Dr. Andreas Ranz, BPS – Li
444, D-67117 Linburgerhof, Germany (e-mail: andreas.renz@basf-ag-de) for more
information.
|
Compare Our Quality.
Marker Gene strives to offer our customers products of the highest quality and at the best possible prices. Our years of experience allow us to provide timely products for less cost to you. See our latest Price Comparison Chart that compares our prices with those from several alternate sources, to see if you can save money by switching to Marker Gene (http://www.markergene.com/crossref.htm). Or visit our website at www.markergene.com and click on the link “COMPARE”. We think you will appreciate our efforts to keep costs low and maintain excellent quality of our products for your research. For more information about any of our products, simply telephone us toll free at 1-888-218-4062 or contact us by e-mail at techservice@markergene.com. We will be happy to send you more about our products and their specifications. |
New 2005-2006 Catalog Now
Available.
The
2005 edition of the Marker Gene catalog is now available. Visit our website or use the link www.markergene.com/catalog2005-2006.pdf for an electronic version. Many new
products and kits, additional literature references, data and protocols have
been included, as well as new information about our old products. Ifyou haven’t already received yours, be
sure to add your name to our mailing list. Visit our Customer
Information Form, or e-mail us at techservice@markergene.com and we will have a copy sent out to you post-haste. Sign up now!
|
CONTRACT RESEARCH@markergene.com
Marker Gene Technologies, Inc. has the expertise to perform contract research with you on your project. We have worked with many biotechnology and pharmaceutical companies on successful, proprietary and patented projects.
Contract Research and Development Capabilities in the following areas:
- Established in 1993 at the University of Oregon Riverfront Research Park.
- Screening Assay Development for HTS and uHTS
- Chemical and Cellular Assays – High-Content Screening.
- DNA/RNA (genomics) and protein (proteomics) labeling and assay development.
- Pharmaceutical Intermediates - design, synthesis, and in vitro testing in mammalian cell culture.
- Specializing in Carbohydrate, Lipid, Peptide, and Nucleic Acid Chemistries.
- Fully equipped laboratories (Biochemistry, Chemical Synthesis, Tissue Culture, Analytical).
- Confidentiality, help in patent preparation and filings.
Contact us by telephone at (888) 218-4062 or (541) 342-3760 or FAX us at (541) 342-1960 or you can write to us at Contract Research, Marker Gene Technologies, Inc., 1850 Millrace Drive, Eugene, Oregon 97403-1992 or contact us by e-mail at: techservice@markergene.com
|
Marker Gene Accepts Major Credit Cards.
Place your orders now, using Master Card or Visa and save time and money! Our Customer Assistance Staff can now accept either Master Card or Visa Credit Card orders, securely by telephone (toll-free) at 1-888-218-4062 (Domestic orders only). We will continue to accept Institutional Purchase Orders for our products, online or by FAX at 1-541-342-1960. International customers should contact us by e-mail, post or telephone for more information about International Distributors and ordering. For information on pricing for individual products, or for a quote on bulk quantities of our products or kits, please contact our technical assistance staff at techservice@markergene.com. We will be happy to assist you.
|
To add your name to our WebNewsletter mailing list, please use the following link: subscribe@markergene.com.
To unsubscribe from our mailing list, please use the following link: unsubscribe@markergene.com. Your e-mail address will be deleted in 2-3 business days.
|