|
 |
|
Marker
Gene Monthly Newsletter
Month, 2007
Volume
5, Number 8
© Copyright MGT, Inc., 2007. Published by
Marker Gene Technologies, Inc., The University of Oregon Riverfront Research
Park, 1850 Millrace Drive, Eugene, Oregon 97403-1992 USA. All rights reserved. For information on the use or copying of the
material contained in this document, please contact us at techservice@markergene.com. Please see below for subscription
information and updates. This
newsletter is labeled as an ADVERTISEMENT in accordance with the
CAN-SPAM act of 2003, S.877 Public Law: 108-187.
|
Plant Flowering Mechanisms.
Plants begin to flower in response to changes in daylight (day length),
temperature and other environmental factors (nutrient levels, stress). This initiation of flowering at the apical
meristem of the plant is very important as these activities lead to propagation
and production of fruit at these centers. It has long been believed that a floral regulation compound (“florigen”)
was produced in leaves and stems of the plant, and this regulatory protein
would travel to the apical meristem to begin the flowering mechanisms. Researchers at the Max Planck Institute for
Developmental Biology (Germany), Salk Institute for Biological Studies (San
Diego, CA) and the Department of Botany, Kyoto University (Japan) have now
published results of studies to elucidate the pathways that initiate flowering
in plants. By using a combination of
techniques, mainly involving tracing gene regulation and expression by
monitoring co-expressed marker genes (EGPF, YFP and GUS), they have identified
a protein, FT (flowering locus T) that may be such a factor. The FT gene codes for a small globular
protein related to the floral repressor TFL1, and is expressed in leaves in
response to long daylight (16h) days. It travels to the shoot apex and interacts with two transcription
factors, FD and bZIP to start the pathways for flowering. The circadian rhythms of day length are
further regulated by a transcription factor in the leaves called CONSTANS (CO),
that controls expression of the FT gene. Marker gene fusion proteins of the main interacting proteins and factors
as well as a yeast two-hybrid system were used to identify localization of gene
expression, the proteins in apical and vascular tissues as well as protein
interactions. Understanding these
control mechanisms may allow researchers to control flowering in many important
species including rice, peas and soybeans. For more information about these elegant techniques for monitoring gene
expression in vivo please see our web site or the references below.
-
Abe, M. Kobayashi, Y., Yamamoto, S., Daimon, Y., Yamaguchi, A., Ikeda, Y., Ichinoki, H., Notaguchi, M.,
Goto, K., Araki, T.., (2005) “FD, a bZIP Protein Mediating
Signals from the Floral Pathway Integrator FT at the Shoot Apex” Science, 309(5737): 1052-1056.
- Wigge,
P.A., Kim, M.C., Jaeger, K.E., Busch, W., Markus Schmid, M.,
Lohmann, J.U., Weigel, D., (2005) “Integration
of Spatial and Temporal Information During Floral Induction in Arabidopsis” Science 309(5737): 1056-1059.
- Hoffmann-Benning,
S., Zeevaart, J.A.D. “Searching for Florigen” Plant Physiology Online 24:2
(2003) http://www.plantphys.net/article.php?ch=e&id=288
- Ayre,
B.G., “Florigen and a Genetic Approach to Long-Distance Signaling Through the
Phloem” Plant Physiology Online 24:3 (2005) http://www.plantphys.net/article.php?ch=e&id=291
- Miguel
A. Blázquez (2005) “The Right
Time and Place for Making Flowers” Science 309 (5737): 1024-1025.
|
Matrix
Metalloproteinases Involved in Tumor Invasiveness.
Matrix metalloproteinases
(MMPs) belong to a family of secreted or membrane-associated proteins capable
of digesting extracellular matrix components. Several matrix metalloproteinases (MMPs) including
MMP-2 (gelatinase A) and MMP-9 (gelatinase B) have been found to be
significantly enhanced in various carcinomas compared with adjacent
tissues. MMP-2 (72-kDa gelatinase-A)
is therefore often proposed as a potential therapeutic target for cancer
treatment and high-throughput high-content assays are key to these research
efforts. Because these enzymes are
endopeptidases, most current assays for MMP activities involve the use of a
FRET peptide substrate, where cleavage of the internal peptide structure
causes an increase in fluorescence. Marker Gene is currently collaborating with NeoStrata Company, Inc.
(Princeton, NJ) to introduce a new MMP-2/MMP-9 Fluorometric Matrix MetalloProteinase
(MMP) Assay Kit designed to screen drugs or inhibitors that affect
matrix metalloproteinase-2 (MMP-2, gelatinase A) activity. This assay utilizes a quenched fluorogenic
peptide substrate incorporating EDANS fluorescence (EX 340nm / EM 490 nm M0273) that is
quenched by a DABCYL group (M1051) until
cleavage by MMP at the Gly-Leu bond. The assay can be performed in a convenient 96-well microplate format
using cell culture lysates and
supernatants, tissues, plasma, serum, or purified enzymes and can be developed for high-throughput systems. This assay is useful to screen drug targets or inhibitors of
MMP-2, a potential therapeutic target. Included in this kit will be the fluorogenic substrate, assay buffer, a
prototypic control inhibitor and a detailed protocol. For more information about these new
assays, please see the references below or visit our website.
- Sier C.F., Kubben
F.J., Ganesh S., Heerding M.M., Griffioen G., Hanemaaijer R., van Krieken J.H., Lamers C.B., Verspaget H.W., (1996) “Tissue levels of matrix
metalloproteinases MMP-2 and MMP-9 are related to the overall survival
of patients with gastric carcinoma.” Br J. Cancer 74(3): 413-7.
- Knight C.G., Willenbrock F., Murphy G., (1992) “A novel coumarin-labelled peptide
for sensitive continuous assays of the matrix metalloproteinases.” FEBS Lett. 296(3): 263-266.
- Stryer, L., (1978) “Fluorescence energy transfer as a spectroscopic
ruler.” Annu.Rev.Biochem. 47: 819-846
- Lauer-Fields J.L., Kele P., Sui G., Nagase H., Leblanc R.M., Fields G.B., (2003) “Analysis of
matrix metalloproteinase triple-helical peptidase activity with
substrates incorporating fluorogenic L- or D-amino acids. “Anal Biochem 321(1): 105-15
- Neumann , U., Kubota, H., Frei, K., Ganu, V., Leppert, D., (2004)
“Characterization of Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2, a
fluorogenic substrate with increased specificity constants for
collagenases and tumor necrosis factor converting enzyme.” Anal.
Biochem., 328: 166-173.
|
Live Cell Yeast Luciferase Assays.
The firefly
luciferase gene is widely used as a marker gene in many live cell systems. Analysis of the firefly luciferase marker gene
in live yeast can be used to measure individual
recombinant yeast cells containing the luciferase gene as a function of
promoter activity. The assay conditions typically involve
selecting a single colony from an agar plate containing a selective
medium. This colony is then used to
inoculate 3.0 mL of sc medium and grown overnight at 30 °C. 2 mL of this overnight culture is
then used to inoculate 18 mL of fresh sc medium, until the OD600 nm reaches a value of 0.4, and then 90 μL of this cell suspension is
transferred to sterile white 96-well microtiter plates. If required, 10 μL of an analyte (drug candidate)
sample can be added at this point (or 10 μL of media for control samples). Luminescence measurements are performed
using a luminometer capable of reading a 96-well microplate format
(Perkin-Elmer HTS 7000 or similar). A
solution of d-luciferin
1 mM in 0.1 M Na citrate buffer solution at pH 5.0
(100 μL) is added or injected with an automatic dispenser and after
a brief shaking luminescence measurements are performed with at least 5 second integration. Light emissions
are usually expressed as relative light units (RLU) versus blank samples. Marker Gene offers the Live Cell Luciferase Assay Kit (M0626) that provides all the reagents and protocols for analysis of firefly luciferase activity in vivo.
- Leskinen,
P., Virta M., Karp, M., “One-step
measurement of firefly luciferase activity in yeast” Yeast (2003) 20: 1109–1113.
- Michelini
E., Leskinen P., Virta M., Karp M., Roda A., (2005) “A new recombinant
cell-based bioluminescent assay for sensitive androgen-like compound
detection.” Biosens Bioelectron 20(11): 2261-2267.
|
Marker Gene Adds
Helix Research Fluorescent Reagents.
Marker Gene is in negotiations to offer products from Helix
Research Laboratories. Helix Research
currently produces over 200 High-Quality Research Products that include a
wide base of fluorescent reagents and reactive dyes, membrane labeling
reagents, aminodextrans and dextran conjugates and a variety of cell biology
reagents. Marker Gene will be adding
these reagents and will also incorporate them into a variety of new kits and
allied detection systems for easy use. Check our website for updates
and more information.
|
Each month we will feature one of our products
and also provide a discount for researchers so that they can evaluate it in their
research. This month’s product is M0545: Dihydrorhodamine 123 (DHR123). Dihydrorhodamine 123 is a highly reactive
form of the red fluorescent fluorophore Rhodamine, that becomes fluorescent
upon interaction with reactive oxygen species (ROS), during apoptosis, or in
response to oxidative burst activity in leukocytes as an indication of
hereditary diseases like chronic granulomatous disease (CGD). DHR123 is practically non-fluorescent
until oxidized intracellularly to the bright red fluorescent rhodamine 123
product. Assay conditions for
staining live cells including mammalian, yeast, bacterial and plant cells are
available on our website. Marker Gene
will provide a 25% discount * on all orders of M0545 for the month of
September. Please use Product Code
APG805 when placing your order. For
more information see the references listed below, contact our technical assistance staff or visit our Website.
-
"Dihydrorhodamine 123: a new flow cytometric
indicator for respiratory burst activity in neutrophil granulocytes." G.
Rothe, A. Oser, G. Valet Naturwissenschaften 75: 354-355 (1988).
- "A fast and easy method to determine the
production of reactive oxygen intermediates by human and murine phagocytes
using dihydrorhodamine 123." A. Emmendorffer, M. Hecht, M.L.
Lohmann-Matthes, J. Roesler, J Immunol. Methods 131: 269-275 (1990).
- "Flow cytometric measurement of the respiratory
burst activity of phagocytes using dihydrorhodamine 123." G. Rothe, A.
Emmendorffer, A. Oser, J. Roesler, G. Valet, J. Immunol. Methods 138:
133-135 (1991).
- "The oxidative metabolism of glutamine. A
modulator of reactive oxygen intermediate-mediated cytotoxicity of tumor
necrosis factor in L929 fibrosarcoma cells." V. Goossens, J. Grooten, W.
Fiers, J. Biol. Chem. 271: 192-196 (1996).
- "Dihydrorhodamine 123 identifies impaired
mitochondrial respiratory chain function in cultured cells harboring
mitochondrial DNA mutations." C. Sobreira, M. Davidson, M.P. King, A.F.
Miranda, J. Histochem. Cytochem. 44: 571-579 (1996).
- "The regulation of reactive oxygen species
production during programmed cell death." S. Tan, Y. Sagara, Y. Liu, P.
Maher, D. Schubert, J. Cell Biol. 141: 1423-1432 (1998).
- "A sensitive flow cytometric method for
measuring the oxidative burst." M.A. Model, M.A. KuKuruga, R.F. Todd, J.
Immunol. Methods 202: 105-111 (1997).
- "Identification of oxidant-sensitive proteins:
TNF-alpha induces protein glutathiolation." D.M. Sullivan, N.B. Wehr,
N.M. Fergusson, R.L. Levine, T. Finkel, Biochemistry 39: 11121-11128
(2000).
*Note: Limit, one
order per customer, 5 unit maximum. Does not apply with any other discounts or separate bulk quotes, Offer
expires September 30, 2005.
|
Compare Our Quality.
Marker Gene strives to offer our customers products of the highest quality and at the best possible prices. Our years of experience allow us to provide timely products for less cost to you. See our latest Price Comparison Chart that compares our prices with those from several alternate sources, to see if you can save money by switching to Marker Gene (http://www.markergene.com/crossref.htm). Or visit our website at www.markergene.com and click on the link “COMPARE”. We think you will appreciate our efforts to keep costs low and maintain excellent quality of our products for your research. For more information about any of our products, simply telephone us toll free at 1-888-218-4062 or contact us by e-mail at techservice@markergene.com. We will be happy to send you more about our products and their specifications. |
CONTRACT RESEARCH@markergene.com
Marker Gene Technologies, Inc. has the expertise to perform contract research with you on your project. We have worked with many biotechnology and pharmaceutical companies on successful, proprietary and patented projects.
Contract Research and Development Capabilities in the following areas:
- Established in 1993 at the University of Oregon Riverfront Research Park.
- Screening Assay Development for HTS and uHTS
- Chemical and Cellular Assays – High-Content Screening.
- DNA/RNA (genomics) and protein (proteomics) labeling and assay development.
- Pharmaceutical Intermediates - design, synthesis, and in vitro testing in mammalian cell culture.
- Specializing in Carbohydrate, Lipid, Peptide, and Nucleic Acid Chemistries.
- Fully equipped laboratories (Biochemistry, Chemical Synthesis, Tissue Culture, Analytical).
- Confidentiality, help in patent preparation and filings.
Contact us by telephone at (888) 218-4062 or (541) 342-3760 or FAX us at (541) 342-1960 or you can write to us at Contract Research, Marker Gene Technologies, Inc., 1850 Millrace Drive, Eugene, Oregon 97403-1992 or contact us by e-mail at: techservice@markergene.com
|
Marker Gene Accepts Major Credit Cards.
Place your orders now, using Master Card or Visa and save time and money! Our Customer Assistance Staff can now accept either Master Card or Visa Credit Card orders, securely by telephone (toll-free) at 1-888-218-4062 (Domestic orders only). We will continue to accept Institutional Purchase Orders for our products, online or by FAX at 1-541-342-1960. International customers should contact us by e-mail, post or telephone for more information about International Distributors and ordering. For information on pricing for individual products, or for a quote on bulk quantities of our products or kits, please contact our technical assistance staff at techservice@markergene.com. We will be happy to assist you.
|
To add your name to our WebNewsletter mailing list, please use the following link: subscribe@markergene.com.
To unsubscribe from our mailing list, please use the following link: unsubscribe@markergene.com. Your e-mail address will be deleted in 2-3 business days.
|